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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015921527.1_cds_XP_016470448.1_62894
CDS Infomation

[gene=LOC107792726] [db_xref=GeneID:107792726] [protein=probable sphingolipid transporter spinster homolog 2] [protein_id=XP_016470448.1] [location=complement(join(6738..6871,7002..7080,8249..8377,8772..8891,9220..9333,9566..9642,9849..9946,10107..10161,10814..10873,10943..11045,11142..11216,11754..11829,11955..12059,14208..14309,14600..14731,15341..15501))] [gbkey=CDS]
Sequence

ATGGAAAAACAAGAAAAAGAGCCAAAGCCTTCGGATGATTCAAATTCAACACCTAAACCT
AATACAAATACAAACACATCCTTAGCTGCAGAGACAGGCATGGTTATACCTTCAATTTCA
TCGTCATTACTCCCTCAACCTTCTTGGTTCACTGCCAAAAGGTTACTTGCCGTATTCTGT
GTGATCAACTTGTTAAACTATGTGGACCGTGGAACTATTGCGAGCAATGGTGTTAATGGA
AGCCGAAAAACTTGTACAAAAACTGGTACATGTTCTCCTGGCAGCGGAATTCAGGGTGAT
TTTGATTTGAGTAATTTTCAGGATGGTGTCATATCATCTGCTTTCATGGTTGGGCTTCTG
GTGGCATCTCCAATATTTGCCTCATTATCCAAGAGTGTCAATCCATTCAGACTTATTGGA
GTTGGACTGACAGTGTGGACGCTAGCTGTTGCTGGTTGTGGTTTGTCAATTAATTTCTGG
TTGATTGCAACATGCAGAATGTTTGTGGGTGTTGGTGAGGCATCTTTCATAAGCCTTGCT
GCTCCTTTTATTGATGATAATGCCCCTGTTGCTCAGAAAACAGCATGGCTGGGAATATTT
TACATGTGTATACCAGCTGGGATAGCTGTTGGCTATGTATATGGTGGACTGGTTGGCAAT
CATCTTAACTGGCGTTGGGCATTTTGGATCGAGGCAATACTTATGCTTCCCTTTGCAGTT
TTAGGTTTATTTATGAAACCATTGCAATTAAAAGGATTCTCTCACACCGGATCTAAAAAA
CCATTGACTTCTCCCCTGACTGCTCCAGAAGAAGCTGTTTCAAATTGTAACCATGGTTTG
TTACCATCACAGGAAGATTCCAAGGATGGTTCAAAAAGTGCACCTACTAATTTGAATCAG
CTGACAAGATTTTGGAAGGATATGAAGGTGCTTCATCTGGAAAAGGTTTATCTCGTCAAT
GTCTTAGGATACATCGCATATAATTTTGTAATTGGTGCGTATTCCTATTGGGGACCAAAG
GCTGGTTATAACATATACCATATGAAAAATGCAGACATGACGTTTGGAGGTATTACTATA
GTATGTGGAATATTGGGAACCTTGGCTGGAGGCCTTGTTTTGGATCGAATGAATTCCACA
ATATCCAATGCCTTTAAGCTTCTCTCAGTGGCAACATTTCTTGGAGCAATATTTTGCTTT
GCTGCCTTTTGTTTTAAGAACTTGTATGTTTTCATCGCTCTTTTTGCGATAGGAGAACTG
CTTGTATTTGCAACACAGGGCCCTGTAAATTATGTCTGTCTCCATTGCGTCAAACCAAGT
CTTAGACCACTGTCTATGGCGATGTCTACTGTTTCAATTCACATATTTGGTGATGTACCT
TCCTCTCCTCTAGTGGGGGTCGTCCAGGACCGCATTGACAATTGGAGAGTAACTGCTTTG
ATCTTGACATCAATTCTATTTATAGCCGCTGGAATATGGTTTATAGGCATCTTTCTTCAT
AGCGTAGATAGATTTGATGAAGATAGTGAGGATCAAGTAAGTGATGCTGAGAGAGCAAAC
TCACCACCGTTGCTTGAGAAGAAAAGTACTGAACCGATTGAGGTCTCTGTCGAATCCTAA

Peptide Sequence

PEP ID

XP_016470448.1
PEP Infomation

PREDICTED: probable sphingolipid transporter spinster homolog 2 [Nicotiana tabacum]
Sequence

MEKQEKEPKPSDDSNSTPKPNTNTNTSLAAETGMVIPSISSSLLPQPSWFTAKRLLAVFC
VINLLNYVDRGTIASNGVNGSRKTCTKTGTCSPGSGIQGDFDLSNFQDGVISSAFMVGLL
VASPIFASLSKSVNPFRLIGVGLTVWTLAVAGCGLSINFWLIATCRMFVGVGEASFISLA
APFIDDNAPVAQKTAWLGIFYMCIPAGIAVGYVYGGLVGNHLNWRWAFWIEAILMLPFAV
LGLFMKPLQLKGFSHTGSKKPLTSPLTAPEEAVSNCNHGLLPSQEDSKDGSKSAPTNLNQ
LTRFWKDMKVLHLEKVYLVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMKNADMTFGGITI
VCGILGTLAGGLVLDRMNSTISNAFKLLSVATFLGAIFCFAAFCFKNLYVFIALFAIGEL
LVFATQGPVNYVCLHCVKPSLRPLSMAMSTVSIHIFGDVPSSPLVGVVQDRIDNWRVTAL
ILTSILFIAAGIWFIGIFLHSVDRFDEDSEDQVSDAERANSPPLLEKKSTEPIEVSVES

Transcript Sequence

Gene sequence data has not been registered.